Deependra

Deependra

Assistant Professor of Genetics and Plant Breeding

Agriculture and Forestry University

Biography

At different occassions I have jabbed myself to awefully curate (Mostly, compiling other times authoring myself) some useful contents (articles and blogs). Please don’t be intimidated by the style and coverage of the contents – I’m working on making it more comprehensive. Meanwhile, concerning majority of contents in this site, I shamelessly disclose that most were assembeled plain copy-text while I was and still am sifting through mostly coding and research stuffs deemed valuable to myself.

Currently, I work as a tenured faculty in Agriculture and Forestry University (AFU) Nepal. I have been mentoring as well guiding undergraduate students of Agriculture faculty in courses relating to Plant Breeding and Genetics since April 2019, long since acquiring the tenure. I cherish having had experience in seed industry before falling back to academia again. In the seed production and processing company, I worked as seed production officer and seed researcher. While taking up a job in role of crop development officer at a government run seed laboratory, I was fortunate to meet with practices and challenges of seed certification allthewhile working to improving laboratory workflows.

I specialize in designing and handling research trials. While in seed industry, I engaged in organization, analysis and visualization of seed production and certification data. My hobbies mostly relate to making sense of crop production dynamics, identifying sources of variation, analysis and inference of biological data and visualization. Occassionally, I run and play soccer, if and when chance favors.

Interests

  • Design of Experiments
  • Plant Breeding
  • Genetics

Education

  • MSc in Plant Breeding and Genetics, 2018

    Agriculture and Forestry University

  • BSc in Agriculture, 2015

    Institute of Agriculture and Animal Science

  • Intermediate Level in Science, 2010

    Orchid Science College

Experience

 
 
 
 
 

Assistant Professor

AFU

Apr 15150 – Present Kailali, Nepal
Leading teaching, research and extension activities from Department of Genetics and Plant Breeding, CNRM-Tikapur branch under AFU
 
 
 
 
 

Seed Production Officer

MoLMACPA

Apr 21210 – Apr 14140 Kaski, Nepal
Seed certification and seed testing
 
 
 
 
 

Assistant Professor

GAASC

Mar 29290 – Dec 31310 Baitadi, Nepal
Teaching undergraduate course of Plant Breeding and Genetics
 
 
 
 
 

Plant Breeder/Seed Production Officer

Unique Seed Company

May 1010 – Mar 28280 Kailali, Nepal

Responsibilities include:

  • Analysing
  • Designing
  • Production
  • Reporting

Trainings and accomplishments

Killing time

Recent Posts

Simulating genetic drift

Genetic drift is the result of bernouli process on survival of individuals (given some probability for each of them) of a population over a number of independent trials (Generation). Apparently there are two techniques of seeing such process – one individual level, other the population level.

Missing negative from the normal

A normal function isn’t so normal The normal density function is: \[ \large f(x) = \frac{1}{\sqrt{2 \pi} \sigma} \exp^{-\frac{(x - \mu)^2}{(2 \sigma^2)}} \] It doesn’t make sense to calculate the probability for a single value in a continuous probability function, it is by definition zero, but you can calculate relative likelihoods (heights).

Relating quantile distribution and selection intensity

What has wikipedia to say about ? In probability and statistics, the quantile function, associated with a probability distribution of a random variable, specifies the value of the random variable such that the probability of the variable being less than or equal to that value equals the given probability.

Internals of Mixed Models

Linear mixed models are widely used in Agriculture and Plant Breeding, as of recent. With access to genotype data high resolution phenotype data, it has become more of a requirement to use this family of model. Mixed models allow for experimental (design or outcome) variables’ parameter estimates to have probabilistic distributions – most commonly normal – with opportunity to specify different variance-covariance components among the levels of those variables.

The nature of code: Why is it

Many find genetics, as a field of science on its own, charming. Many more are excited to learn about the science that fits seamlessly into complexity driven life of organisms, providing explanation for natural phenomena at both micro-evolutionary and macro-evolutionary scales.

Projects

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Blogs to chase

Read and write for yourself

External Project

A collection of everything worth looking at through external_link.

Recent & Upcoming Talks

Example Talk

An example talk using Academic’s Markdown slides feature.

Example Talk

An example talk using Academic’s Markdown slides feature.

Recent Publications

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An example preprint / working paper

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Contact

  • 9845333283
  • Bharatpur-11, Chitwan, Bagmati Province 44200
  • Get straight to the Durga Mandir and follow the irrigation canal to the east until 40 metres ahead of a iron flyover over the canal. Turn to right and follow the shabby short road for 50 metres in and look for a bluish colored house with a single room narrow cabin on the front.
  • Monday 10:00 to 13:00
    Wednesday 09:00 to 10:00
  • DM Me
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  • Chat on Keybase
  • Discuss on Forum